BtaEX0019882 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33077946-33082933:-
Coord C1 exon
chr24:33082750-33082933
Coord A exon
chr24:33081000-33081140
Coord C2 exon
chr24:33077946-33078105
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTATTTTCTTTATCCTTAAGGTG
3' ss Score
9.25
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTCACAGTTTGCCGTGGATGTGCTGACAACAGCGTCCAGAGGGCTCGTGTTTTATACGGGGACTAGGAGCTCCTTTATGGCTCTTTATCTTTCAAAAGGACGGCTGGTCTTTGCCCTGGGGGCAGAAGGGAAAAAACTGAAACTCAAAAGCAAAGAGAAGTGCAATGACGGGAAGTGGCACACG
Seq A exon
GTGACATTTGGGCAAGATGGAGGCAAGGGGCGCTTGGTTGTGGATGGTCTGAGGACCCGGGAGGGACATCTGCCTGGAAATTCCACCATCAGCCTCAGAGCACCAGTTTACCTGGGATCGGCTCCATCAGGGAAGCCAAAG
Seq C2 exon
AGCCTCCCCCAGAACAGCTTTGTGGGCTGCCTGAGGAACTTTCAGTTGGATCTGAAACCCCTGGAAACCCCTTCTGCAAGTTTTGGGGTGTCTCCGTGCTTGGGTAGCTCTTTGGAGAAAGGCATTTATTTCTCCCAAGAAGGAGGTCATATCATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181-'77-83,'77-81,81-83
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PU(44.6=87.1)
A:
PF0221019=Laminin_G_2=FE(38.0=100)
C2:
PF0221019=Laminin_G_2=PD(14.9=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTCGTGTTTTATACGGGG
R:
CACGGAGACACCCCAAAACTT
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development