RnoEX6058048 @ rn6
Exon Skipping
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3928597-3934337:+
Coord C1 exon
chr18:3928597-3928780
Coord A exon
chr18:3931152-3931292
Coord C2 exon
chr18:3934178-3934337
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCTTTGTTCTAAAGGTG
3' ss Score
9.46
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTCACAGTTTTCTTTAGACATACAGACAACTTCCCCCAAAGGACTGGTGTTTTACACAGGCACCAAGGACTCCTTCCTGGCTCTTTATGTCGCAGATGGCCGTGTTGTCTTTGCTTTGGGGGCAGGAGGGAAGAAACTGAGACTCAGGAGCAAGGAGAGATACCATGACGGGAAGTGGCACACG
Seq A exon
GTGGTGTTCGGACTAAATGGAGGAAAGGCACGCCTGGTTGTGGATGGGCTAAGGGCCCAGGAAGGCAGTTTGCCTGGAAATTCTACCATCAGCCCCAGAGAACAGGTTTACCTGGGGTTGCCGCTATCAAGAAAGCCAAAG
Seq C2 exon
AGCCTACCCCAGCACAGTTTTGTGGGGTGCCTGAGAGATTTCCAGTTGAACTCGAAACCCCTGGATTCTCCTTCTGCGAGGTTTGGGGTATCTCCCTGCTTGGGTGGCTCTTTAGAGAAAGGCATTTATTTCTCCCAAGGAGGAGGCCATGTGATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300-'95-91,'95-90,98-91=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.064 C2=0.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PU(44.6=87.1)
A:
PF0221019=Laminin_G_2=FE(38.0=100)
C2:
PF0221019=Laminin_G_2=PD(14.9=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTTCCCCCAAAGGACTGG
R:
AGATACCCCAAACCTCGCAGA
Band lengths:
251-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]