GgaEX6021335 @ galGal4
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr2:102889123-102890697:+
Coord C1 exon
chr2:102889123-102889312
Coord A exon
chr2:102889926-102890075
Coord C2 exon
chr2:102890538-102890697
Length
150 bp
Sequences
Splice sites
3' ss Seq
TATTTTTGTACCCTGAAAAGGTG
3' ss Score
4.8
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTTACATTTTTCTGTGGATATACGAACTCGATCATCAAGAGGATTAATAGTTTTTATGGAGGGAAGGTCTGAGAACTCTTACACAGCTCTCCACATTTCAAAAGGCCGTTTTGTCTTTTCGCTTGGTTCTGGAAGAAGACGAATCAAGATCAAAACTAGTGTTAAATACAATGATGGGCAATGGCATACT
Seq A exon
GTGGTATGCAGCAGAGATGGGGAGAATGTCCTCCTTGTTGTTGATGGTCTGAGAGCTCAACATGGAAGATTGGGAAGATTAGGAAGAGCTTCCACCAATGACATTAAGCCACCAGTCTACCTGGGAGGGCCGCCATTGCTGAAAAGACAG
Seq C2 exon
AATATACCAATGAAGAGTTTCAAGGGTTGCCTGAGGAATTTTAAGATGAATGGAAAAGTCATGAACACACCTCAGCAAAAAAAGGATGTGCTTCCCTGCCTAGATGCTCCCATGGAGATGGGGATTCATTTCTTTAAGGAAGGAGGATACGTTGCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'82-94,'82-93,84-94=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.056
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PU(44.4=87.5)
A:
PF0221019=Laminin_G_2=FE(38.9=100)
C2:
PF0221019=Laminin_G_2=PD(14.3=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCGTTTTGTCTTTTCGCT
R:
ACAGCAACGTATCCTCCTTCCT
Band lengths:
246-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]