MmuEX6000289 @ mm10
Exon Skipping
Gene
ENSMUSG00000024421 | Lama3
Description
laminin, alpha 3 [Source:MGI Symbol;Acc:MGI:99909]
Coordinates
chr18:12571900-12577911:+
Coord C1 exon
chr18:12571900-12572083
Coord A exon
chr18:12574214-12574354
Coord C2 exon
chr18:12577752-12577911
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCTTTGTTCTAAAGGTG
3' ss Score
9.46
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTTACAGTTTTCTTTGGACATACAGACAACTTCCTCCAGAGGGCTAGTGTTTCACACAGGCACCAGGGACTCCTTTGTGGCTCTCTATCTCTCAGAAGGCCATGTCATCTTTGCCTTGGGGGCAGGAGGGAAGAAACTGAGACTCAGAAGCAAAGAGAGATACCACGATGGGAAGTGGCACTCG
Seq A exon
GTGGTGTTTGGACTGAGTGGAAGAAAGGTGCACCTGGTGGTGGATGGGCTGAGGGCCCAGGAAGGCAGTTTGCCTGGAAACTCTACCATCAGCCCCAGAGAACAGGTTTACCTGGGGTTGTCACCATCAAGAAAGTCAAAG
Seq C2 exon
AGCCTCCCCCAGCACAGTTTTGTGGGGTGTCTGAGGAACTTCCAGTTGGACTCAAAACCCCTGGATTCCCCCTCTGCGAGGTCTGGGGTATCTCCCTGCTTAGGTGGCTCTTTGGAGAAAGGCATTTATTTCTCCCAAGGAGGAGGTCACGTGGTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024421-'90-87,'90-86,92-87
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.085 C2=0.037
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PU(44.6=87.1)
A:
PF0221019=Laminin_G_2=FE(38.0=100)
C2:
PF0221019=Laminin_G_2=PD(14.9=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACTCCTTTGTGGCTCTCT
R:
TGCCTTTCTCCAAAGAGCCAC
Band lengths:
243-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types