BtaEX0020187 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019192 | LHX8
Description
LIM homeobox 8 [Source:HGNC Symbol;Acc:HGNC:28838]
Coordinates
chr3:69895303-69906847:-
Coord C1 exon
chr3:69906744-69906847
Coord A exon
chr3:69902022-69902117
Coord C2 exon
chr3:69895303-69895486
Length
96 bp
Sequences
Splice sites
3' ss Seq
TACATTTTTTAAAAAAACAGGTT
3' ss Score
4.28
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTAATGGAATTAGTGTTGAAGGCGCCCTCCTTACAGAGCAAGATGTTAATCATCCAAAACCAGCAAAAAGAGCTCGGACCAGCTTTACAGCAGATCAGCTCCAG
Seq A exon
GTTATGCAAGCACAGTTTGCTCAGGACAACAACCCAGATGCACAGACTCTCCAGAAACTGGCAGAAAGGACAGGCTTGAGCAGACGTGTGATACAG
Seq C2 exon
GTATGGTTTCAGAACTGTAGAGCACGCCACAAGAAACATGTCAGTCCTAATCACTCCTCCTCTGCCCCAGTCACAGCAGTGCCACCCTCCAGACTGTCTCCACCCATGTTAGAAGAAATGGCTTATTCTGCATATGTGCCCCAAGATGGGACGATGTTAACTGCACTGCATAGTTATATGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019192_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=0.441 C2=0.419
Domain overlap (PFAM):
C1:
PF099434=DUF2175=FE(32.7=100),PF0004624=Homeobox=PU(20.3=34.3)
A:
PF099434=DUF2175=PD(23.1=70.6),PF0004624=Homeobox=FE(55.9=100)
C2:
PF0004624=Homeobox=PD(18.6=17.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATTAGTGTTGAAGGCGCC
R:
GGGGCAGAGGAGGAGTGATTA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development