DreEX0042947 @ danRer10
Exon Skipping
Gene
ENSDARG00000042145 | lhx8b
Description
LIM homeobox 8b [Source:ZFIN;Acc:ZDB-GENE-081105-153]
Coordinates
chr8:17885624-17887517:-
Coord C1 exon
chr8:17887417-17887517
Coord A exon
chr8:17886096-17886191
Coord C2 exon
chr8:17885624-17885777
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATTGATTTTGTGGTCTACAGGTT
3' ss Score
7.81
5' ss Seq
CAGGTTACT
5' ss Score
0.49
Exon sequences
Seq C1 exon
GGAAATCCGTCAGTCCTGAAAAAGCATTGGCTGCTGGCTGTGAGATAAAACAAAAACCATCTAAAAGAGCACGTACCAGTTTCACTGCAGACCAGCTCCAG
Seq A exon
GTTATGCAGGCTCAGTTTGTTCAGGACAATAATCCAGACGCACAGATGCTTCAGAGTCTTGCTGAACAGACTGGACTTAGTCGACGCGTCATTCAG
Seq C2 exon
GTCTGGTTTCAGAACTGCCGTGCGCGTCATAAGAAGCACGTTTCTACCCCTCATTCAGCTGGTCTGTCTTCACTGTCGTCCACATCCACTGTGAATGAGCTGAGATATACAGAAACAACCCTGCTTACAGGACTGCACAACACCTGCATACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042145-'4-9,'4-8,5-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.123 C2=0.237
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(21.1=35.3)
A:
PF0004624=Homeobox=FE(54.4=100)
C2:
PF0004624=Homeobox=PD(19.3=21.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACGTACCAGTTTCACTGC
R:
CAGGTGTTGTGCAGTCCTGTA
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]