HsaEX0035751 @ hg38
Exon Skipping
Gene
ENSG00000162624 | LHX8
Description
LIM homeobox 8 [Source:HGNC Symbol;Acc:HGNC:28838]
Coordinates
chr1:75143845-75157076:+
Coord C1 exon
chr1:75143845-75143948
Coord A exon
chr1:75148587-75148682
Coord C2 exon
chr1:75156893-75157076
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATACATGTTTTAAACAACAGGTT
3' ss Score
5.24
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
GGAATGGGATTAGTGTGGAAGGTGCCCTCCTCACAGAGCAAGATGTTAACCATCCAAAACCAGCAAAAAGAGCTCGGACCAGCTTTACAGCAGATCAGCTTCAG
Seq A exon
GTTATGCAAGCACAATTTGCTCAGGACAACAACCCAGATGCACAGACACTCCAGAAATTGGCAGAAAGGACAGGCTTGAGCAGACGTGTGATACAG
Seq C2 exon
GTGTGGTTTCAGAATTGTAGAGCACGCCACAAGAAACACGTCAGTCCTAATCACTCATCCTCCACCCCAGTCACAGCAGTCCCACCCTCCAGGCTGTCTCCACCCATGTTAGAAGAAATGGCTTATTCTGCCTACGTGCCCCAAGATGGAACGATGTTAACTGCGCTGCATAGTTATATGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162624_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=0.531 C2=0.532
Domain overlap (PFAM):
C1:
PF099434=DUF2175=FE(34.3=100),PF0004624=Homeobox=PU(21.1=34.3)
A:
PF099434=DUF2175=PD(19.2=59.4),PF0004624=Homeobox=FE(54.4=100)
C2:
PF0004624=Homeobox=PD(19.3=17.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAAGAGCTCGGACCAGCT
R:
GGGGCACGTAGGCAGAATAAG
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development