RnoEX0049904 @ rn6
Exon Skipping
Gene
ENSRNOG00000028348 | Lhx8
Description
LIM homeobox 8 [Source:RGD Symbol;Acc:1308749]
Coordinates
chr2:260580107-260589992:-
Coord C1 exon
chr2:260589889-260589992
Coord A exon
chr2:260584296-260584391
Coord C2 exon
chr2:260580107-260580290
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTTTTAAAAAATAATCACAGGTT
3' ss Score
3.55
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTAATGGGATTAGTGTGGAAGGAGCCCTTCTCACAGAACAAGACGTCAATCATCCAAAGCCAGCCAAAAGAGCTCGGACCAGCTTCACAGCCGATCAGCTCCAG
Seq A exon
GTTATGCAAGCACAGTTTGCTCAGGACAACAACCCAGACGCACAGACCCTCCAGAAACTGGCAGAAAGGACAGGCTTAAGCCGGCGAGTCATACAG
Seq C2 exon
GTGTGGTTTCAGAACTGCAGGGCTCGTCATAAGAAACATGTCAGTCCCAACCACTCCTCCTCTGCCCCGGTCACAGCAGTCCCCTCATCCAGGCTGTCTCCACCCATGTTGGAAGAAATGGCTTATTCCGCCTACGTGCCCCAGGACGGGACGATGCTGACGGCGCTGCATTCATACATGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028348-'4-7,'4-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.406 C2=0.387
Domain overlap (PFAM):
C1:
PF099434=DUF2175=FE(34.3=100),PF0004624=Homeobox=PU(21.1=34.3)
A:
PF099434=DUF2175=PD(19.2=59.4),PF0004624=Homeobox=FE(54.4=100)
C2:
PF0004624=Homeobox=PD(19.3=17.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAGAGCTCGGACCAGCTT
R:
GGGCACGTAGGCGGAATAAG
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]