GgaEX0017106 @ galGal3
Exon Skipping
Gene
ENSGALG00000011369 | F1P4G9_CHICK
Description
NA
Coordinates
chr8:30515944-30520233:+
Coord C1 exon
chr8:30515944-30516047
Coord A exon
chr8:30518856-30518951
Coord C2 exon
chr8:30520050-30520233
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCAACTCTTATCTTTTCAGGTT
3' ss Score
11.4
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTAATGGGGTTAGTATGGAAGGAGCACTGTTAACAGAGCAAGATGTTAATCATCCAAAACCTGCGAAAAGAGCTCGGACCAGCTTCACAGCAGATCAACTCCAG
Seq A exon
GTTATGCAAGCACAGTTTGCTCAGGACAACAATCCAGATGCACAAACGCTTCAGAAACTGGCAGAAAGAACAGGCCTGAGCAGGCGCGTTATACAG
Seq C2 exon
GTGTGGTTTCAGAATTGCAGAGCACGTCATAAGAAACATGTTAGTCCTAATCATTCCTCTACTGCTCCAGTCACAGCAGCTCAGCCCTCCAGGCTGTCTCCACCCATGTTAGAAGAAATGGCATATTCAGCATATGTACCCCAAGATGGGACTATGTTAACTGCCCTGCATAGTTATATGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011369-'4-5,'4-4,6-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.657 A=0.531 C2=0.516
Domain overlap (PFAM):
C1:
PF099434=DUF2175=FE(33.7=100),PF0004624=Homeobox=PU(21.1=34.3)
A:
PF099434=DUF2175=PD(20.8=65.6),PF0004624=Homeobox=FE(54.4=100)
C2:
PF0004624=Homeobox=PD(19.3=17.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGTTAGTATGGAAGGAGCA
R:
TGCTGTGACTGGAGCAGTAGA
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]