BtaEX0020541 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024632 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr2:56964666-56998325:+
Coord C1 exon
chr2:56964666-56964770
Coord A exon
chr2:56965635-56965748
Coord C2 exon
chr2:56998249-56998325
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATTTTACTGAAATTCTGCAGATG
3' ss Score
6.86
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
CTGCACTAATGGAAAGATTGCCTCTAGCTGCCAGCTATGTGATGGTTACTGTTACAATGGTGGCACGTGCCAGCTGGACCCAGAGACAAATGTACCTGTGTGTTT
Seq A exon
ATGCTCTGTGGGGTTTAAAAGTCAGCGCTGTGACCAGAAAGAGAACCCCTGTGATCACTACTGTCAGAATGAGGGGATTTGCACTTTAACTGCGTTTAATGAGCCGAGATGCAA
Seq C2 exon
GTGCTCCACCAACTGGTCAGGCACACAGTGTGAGAGGCCAGCCCCAAAGAGCAGCAAGTCTGACCATATCAGCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024632_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF151021=TMEM154=PU(12.2=25.0)
A:
PF0000822=EGF=PU(73.7=71.8),PF151021=TMEM154=PU(16.7=33.3)
C2:
PF0000822=EGF=PD(23.7=33.3),PF151021=TMEM154=FE(33.3=100)
Main Inclusion Isoform:
ENSBTAT00000034302fB3904
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACTAATGGAAAGATTGCCTCT
R:
TGGTCAGACTTGCTGCTCTTTG
Band lengths:
170-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development