GgaEX0018739 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31361458-31373375:-
Coord C1 exon
chr7:31373271-31373375
Coord A exon
chr7:31371287-31371400
Coord C2 exon
chr7:31361458-31361534
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATTTTACTGAAATTCTGCAGATG
3' ss Score
6.86
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
TTGCACTAATGGAAAGATTGCCTCCACATGTCAGTTATGTGATGGCTACTGCTACAATGGTGGTACATGCCAGCTGGACCCCGACACAAATGTACCTGTCTGTCT
Seq A exon
ATGCTCTGTGGGGTTTAAAAGTCAGCGCTGTGACCAGAAAGTGAACCCTTGTGATTACTACTGTCAGAATGAGGGAATTTGCACTTTAACTGCGTTTAATGAACCAAGATGCAA
Seq C2 exon
ATGCTCCGCCAACTGGTCAGGCACACAGTGTGAGAGGCCAGCTCCCAAAAGCAGCAAGTCTGACAATATCAGTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000020272fB2222
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACTAATGGAAAGATTGCCTCC
R:
TTGTCAGACTTGCTGCTTTTGG
Band lengths:
170-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]