DreEX0043721 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36866636-36874859:+
Coord C1 exon
chr9:36866636-36866740
Coord A exon
chr9:36872290-36872403
Coord C2 exon
chr9:36874783-36874859
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTCACTGCCATGTGTTCCAGCTG
3' ss Score
8.3
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
CTGTACCAGCGGTCGAATCGCCTCCAGCTGCCAGTTGTGTGATGGCTACTGCTATAACGGAGGCACCTGTCATCTGGACCCCGACACCAGCCTACCCTTCTGCCA
Seq A exon
CTGCACGGCAGGGTTCAAGAACCAGCGCTGCGATGAGCTGGCAAATCCATGCGATTACTACTGTCAGAATGAAGGCATATGCACAATAACTGCCCTTAACAAACCTCGATGCAA
Seq C2 exon
ATGTTCAGCTAATTGGTCGGGGACGCAGTGCGAAAGACCGGCGCCAAAGAGCAGCCGCTCCGACAACACAGCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF151021=TMEM154=PU(7.2=16.7)
A:
PF151021=TMEM154=PU(15.4=35.9)
C2:
PF151021=TMEM154=FE(30.1=100),PF118573=DUF3377=PU(15.2=26.9)
Main Inclusion Isoform:
ENSDART00000139033fB3637
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACCAGCGGTCGAATCG
R:
GGCTGTGTTGTCGGAGCG
Band lengths:
178-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]