RnoEX0002993 @ rn6
Exon Skipping
Gene
ENSRNOG00000039050 | AABR07051878.1
Description
NA
Coordinates
chr3:25211734-25235333:-
Coord C1 exon
chr3:25235233-25235333
Coord A exon
chr3:25233846-25233959
Coord C2 exon
chr3:25211734-25211810
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATTTTACTGAAATTCTGCAGATG
3' ss Score
6.86
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
ACTAATGGGAAGATTGCCTCTAGCTGTCAGTTGTGTGATGGCTACTGTTACAATGGTGGCACATGCCAACTGGACCCTGAGACTAGCGTACCTGTGTGTGT
Seq A exon
ATGCTCTGTGGGGTTTAAAAGTCAGCGCTGTGACCAGAAAGAGAACCCTTGTGATCACTACTGTCAGAATGAGGGGATTTGCACTATAACTGCGTTTAATGAGCCGAGATGCAA
Seq C2 exon
GTGCTCCACTAATTGGTCAGGTACACAGTGTGAGAGGCCAGCCCCAAAGAGCAGCAAATCTGAGCATATCAGCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039050-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.389
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF151021=TMEM154=FE(37.1=100),PF118573=DUF3377=PU(18.8=33.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSRNOT00000040023fB143
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAATGGGAAGATTGCCTCTAGC
R:
TGATATGCTCAGATTTGCTGCTCT
Band lengths:
172-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]