BtaEX0020560 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011761 | LRP6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MDE1]
Coordinates
chr5:98096010-98101382:+
Coord C1 exon
chr5:98096010-98096215
Coord A exon
chr5:98097915-98098046
Coord C2 exon
chr5:98100986-98101382
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTGTGATTTATATTTGACAGCTA
3' ss Score
5.78
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GGTTACTAGGCAGGCGGTGGTTAAAGGTTCCCTTCCACATCCTTTTGCCCTGACGTTATTTGAGGACACATTGTACTGGACTGACTGGAATACACATTCCATTTTGGCTTGCAACAAGTACACTGGCGAGGGTCTGCGTGAAATCCATTCTAACATCTTCTCTCCCATGGATATACATGTCTTCAGCCAACAGAGGCAGCCAAATG
Seq A exon
CTACAAATCCATGTGGAATTGATAATGGTGGTTGTTCCCACTTGTGTTTGATGTCTCCAGTCAAGCCTTTTTATCAGTGTGCTTGCCCAACTGGGGTCACACTCCTGGAGAACGGAAAAACCTGCAAAGATG
Seq C2 exon
GTGCCACTGAATTACTGCTTCTAGCCCGAAGGACAGACTTGAGACGCATTTCTTTGGATACACCAGATTTCACTGACATTGTTCTACAGTTAGAAGACATCCGCCATGCCATTGCCATAGATTATGATCCCGTGGAAGGCTATATCTACTGGACTGATGATGAAGTGAGGGCCATACGCCGCTCCTTCATAGATGGATCTGGCAGTCAGTTTGTGGTCACTGCCCAAATTGCCCATCCTGATGGTATTGCTGTTGATTGGGTTGCCCGAAATCTTTATTGGACAGACACTGGCACTGATCGGATAGAAGTGACAAGGCTCAACGGGACCATGAGGAAGATCTTGATTTCAGAGGACTTAGAGGAACCCCGGGCTATTGTGCTAGATCCCATGGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011761-'6-12,'6-10,7-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(47.7=30.0)
A:
PF146701=FXa_inhibition=WD(100=84.4)
C2:
PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGCAGGCGGTGGTTAAAG
R:
GCGTCTCAAGTCTGTCCTTCG
Band lengths:
248-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development