RnoEX0050763 @ rn6
Exon Skipping
Gene
ENSRNOG00000006338 | Lrp6
Description
LDL receptor related protein 6 [Source:RGD Symbol;Acc:1304749]
Coordinates
chr4:168261112-168267184:-
Coord C1 exon
chr4:168266988-168267184
Coord A exon
chr4:168264643-168264774
Coord C2 exon
chr4:168261112-168261508
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTGTGATTTATATTCCGCAGCTA
3' ss Score
7.5
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
ACAGGCAGTGGTTAAAGGTTCCCTTCCACATCCTTTTGCCTTGACGTTATTTGAGGACACATTGTACTGGACTGACTGGAATACACACTCTATTTTGGCTTGCAACAAGTATACTGGCGAGGGTCTGCGTGAAATTCATTCTAACATCTTCTCTCCCATGGATATACATGCTTTCAGCCAACAGAGGCAGCCAAATG
Seq A exon
CTACAAATCCATGTGGAATTGATAATGGTGGTTGTTCCCATTTGTGTTTGATGTCTCCAGTCAAGCCTTTTTATCAGTGTGCTTGTCCAACTGGGGTCAAGCTTCTGGAGAGTGGAAAAACCTGCAAAGATG
Seq C2 exon
GTGCCACTGAACTATTGCTGTTAGCCCGACGGACAGACTTGAGGCGCATCTCTTTGGATACACCAGATTTCACCGACATTGTCCTACAGTTAGAAGACATCCGACATGCCATTGCCATAGACTACGACCCCGTGGAAGGCTACGTCTACTGGACGGACGATGAAGTACGGGCCATCCGTCGCTCCTTCATTGATGGATCTGGCAGTCAGTTTGTGGTCACGGCCCAGATTGCCCATCCTGATGGTATTGCTGTTGACTGGGTGGCAAGAAACCTGTACTGGACAGACACTGGCACTGATCGGATAGAAGTGACAAGGCTCAATGGGACCATGAGGAAGATCCTGATTTCAGAGGACTTAGAGGAGCCCCGGGCTATTGTGTTAGATCCCATGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006338_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(43.9=26.9)
A:
PF146701=FXa_inhibition=WD(100=84.4)
C2:
PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGGTCTGCGTGAAATTCA
R:
GATGGCCCGTACTTCATCGTC
Band lengths:
256-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]