GgaEX1033981 @ galGal4
Exon Skipping
Gene
ENSGALG00000011558 | LRP6
Description
low density lipoprotein receptor-related protein 6 [Source:HGNC Symbol;Acc:HGNC:6698]
Coordinates
chr1:71878293-71888077:-
Coord C1 exon
chr1:71887881-71888077
Coord A exon
chr1:71887032-71887163
Coord C2 exon
chr1:71878293-71878689
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTGTGATTTATGTTTAACAGCTA
3' ss Score
6.66
5' ss Seq
ATGGTAGGC
5' ss Score
7.42
Exon sequences
Seq C1 exon
GCAAGCAGTGGTTAAAGGCTCCCTTCCACATCCTTTTGCTTTGACGCTGTTTGGGGACACATTGTACTGGACTGACTGGAACACGCATTCCATCTTGGCCTGCAGCAAGTACTCTGGGGAGGACCTGCGTGAAATACATTCCAACATCTTCTCACCCATGGATATCCATGCTTTCAGCCAGAAGAGGCAGCCAAATG
Seq A exon
CTACAAACCCATGTGGAATTAATAATGGTGGCTGCTCCCACTTATGTCTGATGTCTCCTACCAAGCCCTCTTATCAGTGTGCATGTCCCACTGGTGTGAAACTTCTTGAGAATGGAAAGACCTGCAAAGATG
Seq C2 exon
GTGCCACTGAACTGCTGCTTCTAGCCCGCCGGACAGATTTGAGGCGCATTTCCTTAGACACTCCAGATTTTACAGACATCGTTTTGCCTCTGGAGGACATCCGTCATGCCATCGCCATTGACTTTGATCCTCTGGAAGGATACATCTATTGGACTGACGATGAAGTTAGAGCCATCCGTCGCTCATTCGTTGATGGGTCAGGTAGTCAGTTTGTTGTCACAGCACAGATTGCTCATCCTGATGGCATTGCTGTGGACTGGGTTGCCCGAAATCTGTATTGGACTGACACTGGCACAGACCGTATAGAAGTTACAAGGCTTAATGGGACCATGAGAAAAATCTTGATATCAGAAGACCTGGAAGAACCTAGAGCTATTGTGCTGGATCCTATGGTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011558_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(42.5=25.4),PF0005812=Ldl_recept_b=WD(100=44.8)
A:
PF146701=FXa_inhibition=WD(100=84.4)
C2:
PF0005812=Ldl_recept_b=WD(100=30.4),PF0005812=Ldl_recept_b=WD(100=30.4),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGACTGGAACACGCATT
R:
TCAAAGTCAATGGCGATGGCA
Band lengths:
256-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]