MmuEX6007453 @ mm9
Exon Skipping
Gene
ENSMUSG00000030201 | Lrp6
Description
low density lipoprotein receptor-related protein 6 [Source:MGI Symbol;Acc:MGI:1298218]
Coordinates
chr6:134457304-134463437:-
Coord C1 exon
chr6:134463241-134463437
Coord A exon
chr6:134461174-134461305
Coord C2 exon
chr6:134457304-134457700
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTGTGATTTATATTTGACAGCTA
3' ss Score
5.78
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GCAGGCAGTGGTTAAAGGTTCCCTTCCACATCCTTTTGCCTTGACGTTATTTGAGGACACATTGTACTGGACTGACTGGAATACACACTCTATTTTGGCTTGCAACAAATATACTGGCGAGGGTCTGCGTGAAATTCATTCTAACATCTTCTCTCCCATGGATATACATGCTTTCAGCCAACAGAGGCAGCCAAATG
Seq A exon
CTACAAATCCATGTGGAATTGATAATGGTGGTTGTTCCCATTTGTGTTTGATGTCTCCAGTCAAGCCTTTTTATCAGTGTGCTTGCCCAACTGGGGTCAAGCTGCTGGAGAATGGAAAGACCTGCAAAGATG
Seq C2 exon
GTGCCACTGAACTATTGCTGTTAGCCCGACGGACAGACTTGAGGCGAATTTCTTTGGATACACCCGATTTTACTGACATTGTTCTGCAGTTAGAAGATATCCGGCATGCCATTGCCATAGACTATGACCCTGTAGAAGGCTACATATACTGGACGGATGACGAAGTGAGGGCTATCCGTCGCTCCTTCATAGATGGATCTGGCAGTCAGTTTGTGGTCACGGCCCAGATTGCTCATCCTGATGGTATTGCTGTTGACTGGGTTGCAAGGAACCTGTACTGGACAGACACTGGCACGGATCGTATAGAAGTGACAAGGCTCAATGGGACCATGAGGAAGATCTTGATTTCAGAGGACTTAGAGGAGCCCCGGGCTATCGTGTTAGATCCCATGGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030201-'5-6,'5-4,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(43.9=26.9),PF0005812=Ldl_recept_b=WD(100=40.3)
A:
PF146701=FXa_inhibition=WD(100=84.4)
C2:
PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGGTCTGCGTGAAATTCA
R:
TCACTTCGTCATCCGTCCAGT
Band lengths:
248-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: