DreEX6000066 @ danRer10
Exon Skipping
Gene
ENSDARG00000100143 | lrp6
Description
low density lipoprotein receptor-related protein 6 [Source:ZFIN;Acc:ZDB-GENE-090821-1]
Coordinates
chr4:179760-182563:-
Coord C1 exon
chr4:182367-182563
Coord A exon
chr4:179929-180063
Coord C2 exon
chr4:179760-179850
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTGTCAGACG
3' ss Score
7.86
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
GGAGGTGGTGGTGAAGGGCTCTCTGCCGCACCCGTTTGCGCTGACGCTGTACGAGGACACACTCTTCTGGACGGACTGGAACACACACTCCATTCACTCGTGCCACAAACACACGGGCGAGAACAGCCGCGAGGTACACTCCAACATCTTCTCCCCGATGGACATCCACGTCTACAGCCAGCAGCGCCAGCCCATGG
Seq A exon
ACGTGGCGAGCCCCTGCTCTGTGAGGAATGGAGGATGTTCTCATCTGTGTTTGCTGTCTCCGGCCAAACCCTACTATCAGTGCGCCTGTCCAACCGGCGTACAGCTGCTGGAGGACCACAAGAGCTGCAGAGACG
Seq C2 exon
GGCTGATGACTGTTTTATACCCTAAACACACCTGCACAATGCTTCCTGTACTGATGTTTGTGTCGTGCGGTGTGTGTGTGTGTGTGTGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100143-'6-21,'6-20,23-21=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(43.9=26.9)
A:
PF146701=FXa_inhibition=WD(100=82.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTACGAGGACACACTCTT
R:
ACACACACACACACACACACA
Band lengths:
243-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]