BtaEX0020563 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011761 | LRP6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MDE1]
Coordinates
chr5:98125682-98130249:+
Coord C1 exon
chr5:98125682-98125971
Coord A exon
chr5:98127463-98127689
Coord C2 exon
chr5:98130065-98130249
Length
227 bp
Sequences
Splice sites
3' ss Seq
TGTTAATCTTATTTCTGCAGACT
3' ss Score
8.44
5' ss Seq
AGGGTAAAC
5' ss Score
4.45
Exon sequences
Seq C1 exon
GTTCCAACCCCTGCGCTGAGGATAATGGGGGATGTAGCCATCTCTGCCTCTATAGACCCCAGGGCCTTCGCTGTGCCTGCCCCATTGGCTTTGAACTCATCAGTGACATGAAGACCTGCATTGTCCCAGAGGCTTTCCTTCTGTTTTCACGAAGAGCTGACATCAGGAGAATTTCTTTGGAAACTAATAATAATAACGTGGCCATTCCACTCACTGGTGTCAAAGAAGCTTCTGCTTTGGATTTTGACGTGACAGACAACCGGATTTACTGGACTGACATATCACTCAAG
Seq A exon
ACTATCAGCAGAGCCTTTATGAATGGCAGTGCCCTGGAACATGTGGTAGAATTTGGCTTAGATTATCCGGAAGGCATGGCTGTAGACTGGCTTGGGAAGAACTTGTACTGGGCAGACACAGGAACCAATCGAATTGAGGTGTCAAAGTTGGATGGGCAACACCGACAAGTTTTGGTGTGGAAAGACCTAGATAGTCCCAGAGCTCTTGCGTTGGACCCCGCTGAAGG
Seq C2 exon
ATTTATGTATTGGACCGAATGGGGTGGAAAACCTAAGATAGACAGAGCTGCCATGGACGGAAGTGAACGTACCACGCTGGTTCCCAATGTGGGGCGGGCAAACGGCCTGACCATTGACTATGCTAAAAGGAGGCTTTATTGGACAGACCTGGACACCAACTTAATAGAGTCTTCAAATATGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011761_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.063
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=37.1),PF0005812=Ldl_recept_b=PU(24.4=10.3)
A:
PF0005812=Ldl_recept_b=PD(70.7=38.2),PF0005812=Ldl_recept_b=WD(100=53.9),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=65.1),PF0005812=Ldl_recept_b=PU(51.4=30.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGGATGTAGCCATCTCTG
R:
TCCACCCCATTCGGTCCAATA
Band lengths:
293-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development