GgaEX6003129 @ galGal3
Exon Skipping
Gene
ENSGALG00000011558 | LRP6
Description
NA
Coordinates
chr1:73998642-74003180:-
Coord C1 exon
chr1:74002885-74003180
Coord A exon
chr1:74000465-74000691
Coord C2 exon
chr1:73998642-73998826
Length
227 bp
Sequences
Splice sites
3' ss Seq
GTATCTTTACATCCCCAAAGACC
3' ss Score
4.58
5' ss Seq
GGGGTAACT
5' ss Score
4.69
Exon sequences
Seq C1 exon
GCTTAGGTACAAACCCTTGTGCAGAGGATAATGGTGGTTGCAGCCATCTGTGTCTGTACAGACCGCAAGGCCTTCGCTGTGCTTGTCCCATAGGCTTGGAGCTCATCAATGACATGAAGACCTGCATTGTCCCAGAAGCTTTCCTTCTGTTTTCTCGGAGAGCAGATATTAGACGAATCTCTTTAGAAACAAACAACAACAACGTTGCTATTCCACTTACTGGAGTTAAGGAAGCTTCCGCTCTGGATTTTGATGTGACAGACAATCGAATTTACTGGACTGATATTTCATTGAAG
Seq A exon
ACCATCAGCAGAGCTTTTATGAATGGCAGCGCACTGGAACACGTTGTAGAGTTTGGCTTGGATTACCCTGAAGGCATGGCCGTAGATTGGCTGGGGAAGAACTTGTATTGGGCTGATACTGGAACAAATCGCATCGAAGTGTCAAAGCTGGACGGCCAGCATCGCCAAGTGTTGGTGTGGAAAGATCTTGACAGTCCCCGGGCACTGGCACTGGATCCTGCAGAGGG
Seq C2 exon
GTTTATGTACTGGACTGAATGGGGTGGTAAACCGAAGATTGATAGAGCTTCTATGGATGGCAGTGAGCGGACTACTCTGGTACCCAATGTGGGACGTGCCAACGGCCTAACAATTGATTATGCTAAAAGACGACTGTACTGGACTGACCTTGATACCAACCTGATAGAATCCTCCAACATGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011558-'10-22,'10-21,11-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.079
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=36.4),PF0005812=Ldl_recept_b=PU(24.4=10.1)
A:
PF0005812=Ldl_recept_b=PD(70.7=38.2),PF0005812=Ldl_recept_b=WD(100=53.9),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=65.1),PF0005812=Ldl_recept_b=PU(48.7=30.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCCCATAGGCTTGGAGCT
R:
ACCAGAGTAGTCCGCTCACTG
Band lengths:
295-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]