BtaEX0020868 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019839 | LTBP1
Description
Bos taurus latent transforming growth factor beta binding protein 1 (LTBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103091]
Coordinates
chr11:15856506-15888305:+
Coord C1 exon
chr11:15856506-15856631
Coord A exon
chr11:15884662-15884787
Coord C2 exon
chr11:15888162-15888305
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGTCAATGTCTTTTTTGCAGATA
3' ss Score
8.06
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATATTAATGAATGTGAACAACCCGGACTCTGTGGTCCTCATGGAGAATGTCTAAACACAGACAGTTCTTTTCACTGCATCTGCGAACAGGGTTTCTCAATCTCTGCAGATGGACGCACGTGTGAAG
Seq A exon
ATATTGATGAATGTGTAAACAACACTATTTGTGACAGTCACGGGTTTTGTGACAATACGGCTGGCTCCTTCCGCTGCCTCTGTTATCAGGGCTTTCAGGCCCCACAGGATGGGCAAGGGTGTGTGG
Seq C2 exon
ATGTGAACGAATGTGAGCTGCTCAGTGGCGTGTGTGGTGAAGCCTTCTGTGAAAATGTAGAAGGGTCCTTCCTGTGTGTGTGCGCTGACGAAAGCCAGGAGTACAGCCCCATGACCGGGCAGTGCCGCTCCCGGCTCTCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019839_MULTIEX2-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACAACCCGGACTCTGTG
R:
CCATGGAGAGCCGGGAGC
Band lengths:
258-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development