MmuEX0027243 @ mm9
Exon Skipping
Gene
ENSMUSG00000001870 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:MGI Symbol;Acc:MGI:109151]
Coordinates
chr17:75726537-75752170:+
Coord C1 exon
chr17:75726537-75726662
Coord A exon
chr17:75748084-75748209
Coord C2 exon
chr17:75752027-75752170
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTTCAATATCTTTTTTGCAGATA
3' ss Score
8.38
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ACATTAATGAATGTGCACAGCCAGGACTCTGTGGATCTCATGGGGAGTGTCTAAACACACAAGGCTCCTTCCACTGTGTCTGTGAACAGGGGTTCTCCATCTCTGCCGATGGCCGTACATGCGAAG
Seq A exon
ATATTGATGAGTGTGTTAACAACACTGTGTGTGACAGTCACGGCTTCTGTGACAACACAGCCGGCTCTTTCCGCTGCCTCTGTTATCAGGGCTTTCAAGCCCCACAGGATGGGCAAGGGTGTGTGG
Seq C2 exon
ATGTGAACGAGTGTGAACTGCTCAGTGGTGTATGTGGGGAAGCCTTCTGTGAAAACGTGGAAGGATCCTTCCTGTGTGTGTGTGCCGATGAGAACCAGGAGTACAGCCCCATGACTGGGCAGTGTCGCTCTCGGGTCACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001870_MULTIEX2-7/8=6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF062476=Plasmod_Pvs28=PD(37.3=51.2),PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF062476=Plasmod_Pvs28=FE(24.7=100),PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF062476=Plasmod_Pvs28=FE(28.2=100),PF0764510=EGF_CA=WD(100=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAATGTGCACAGCCAGGAC
R:
GCGACACTGCCCAGTCATG
Band lengths:
248-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: