DreEX0044072 @ danRer10
Exon Skipping
Gene
ENSDARG00000056922 | ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-091202-8]
Coordinates
chr17:23056367-23069027:+
Coord C1 exon
chr17:23056367-23056489
Coord A exon
chr17:23059409-23059537
Coord C2 exon
chr17:23068887-23069027
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTGTTCTCTTTCTAGATG
3' ss Score
12.91
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
ATGTTGATGAATGTGAAGATGATACACAACTGTGTATCCCGAATGGAGAATGTTTGAACACTGAGGGTTCATTCCTGTGTGTGTGTGATGCTGGCTTTGTGTCCACCAGGACAGGCTGTCAGG
Seq A exon
ATGTGGATGAGTGTTCTCTGAATGAGAATACCTGTGGAAGTCATGGTACTTGTCAGAATACAATAGGCTCCTTCATCTGCCAGTGCGACCCGGGATTTAAGGACTCTCAGGATGGGCAGGGCTGTGTGG
Seq C2 exon
ATGTGAATGAGTGTGAGCTTCTCGGTAATGTGTGTGGTGAAGCCACCTGTGAGAACCGTGAAGGCACCTTCCTGTGTTTGTGTCCTGATGACCTGCAAGAGTTTGACCCAATGCTTGGCAAATGCATCTCTACACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056922-'22-29,'22-28,25-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=87.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGTGAAGATGATACACAACTGT
R:
AGGTGTAGAGATGCATTTGCCA
Band lengths:
253-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]