GgaEX1034349 @ galGal3
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
NA
Coordinates
chr3:32401606-32410920:-
Coord C1 exon
chr3:32410795-32410920
Coord A exon
chr3:32403697-32403822
Coord C2 exon
chr3:32401606-32401749
Length
126 bp
Sequences
Splice sites
3' ss Seq
ATGTTAATACTTCTTTACAGATA
3' ss Score
8.4
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATATCAATGAATGTGAGAGATCTGACCTCTGTTCACCTCATGGAGAGTGTCTAAACACAGATGGTTCCTACCAGTGCATATGTGAGCAGGGCTTTTCTGTGTCTGCAGACGGCCGAACCTGTGAAG
Seq A exon
ATATCGATGAATGTGTGAATGGCACAGTGTGTGGCAGCCACGGGTTCTGTGAAAACATGGACGGCTCCTACCGCTGCCTCTGTTACCAGGGCTATCAGGACTCACAGGATGGGCAAGGGTGTACAG
Seq C2 exon
ATGTGAATGAATGTGAAATGCTGAGCGGGGTTTGTGGCGAAGCCCTCTGTGAAAACGTTGATGGTTCTTTCCTGTGCCTGTGTTCTGATGAAAACCAGGAGTACGATCCCATGACCGGACAGTGTCGCTTCCGTACCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448-'26-39,'26-38,27-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF062476=Plasmod_Pvs28=PD(24.7=90.7),PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTCTGTTCACCTCATGGA
R:
GATGAGGTACGGAAGCGACAC
Band lengths:
246-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]