BtaEX0021202 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010576 | MAP2K3
Description
Bos taurus mitogen-activated protein kinase kinase 3 (MAP2K3), mRNA. [Source:RefSeq mRNA;Acc:NM_001083693]
Coordinates
chr19:35874150-35876858:+
Coord C1 exon
chr19:35874150-35874289
Coord A exon
chr19:35875339-35875384
Coord C2 exon
chr19:35875878-35876858
Length
46 bp
Sequences
Splice sites
3' ss Seq
CATACCCTGTTCTCTCCTAGCCT
3' ss Score
7.45
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATCGAGATGGCCATTCTGCGATTTCCTTACGAGTCCTGGGGGACCCCCTTCCAGCAGCTGAAGCAGGTGGTAGAGGAGCCGTCCCCCCAGCTCCCAGCTGACCGTTTCTCCCCTGAGTTTGTGGACTTTACTGCACAGTG
Seq A exon
CCTGAGAAAGAACCCCGCGGAACGCATGAGCTACCTGGAGCTGATG
Seq C2 exon
GAGCACCCTTTCTTCACCTCGCACAAAACCAAGAAGACTGACATCGCTGCCTTCGTGAAGGAGATCCTGGGAGAGGACTCGTAGGGGCAGGGCTTGGACCTTCTCCAACTGTCTGTTGGGGCAGTGCTTGCCCACACCCATAAGCTACTGCCGCCCTGGCCTGGGCACCCAAGAGGAATCCAGGGGGCTGCTCCTGCCTGACAGGCAAGGTCCCAAGTGCCAAAGAACCAGACCATCGGGGACCCCCAGTGCCTCTGCCCCTGCTGCTCCAAGGACCCCAAGACTCTAGACTTGGAGGGGCCTGATGCCCCTCACAGAGAAGGCAGCCCTGCCTTGTGCAGGCCACTACCTTGGCTCAGCCCTGGATGCCACCCAAGTTGTATATTTTTTTATCTCTCGACTGAATGGACTTTGCACACTTGGCCTAGGCTGGCCACACCTCTCTCCTGGCATTGGTGAGGAGACCCAGCATGGGGATGAGCCACGTGAATTCCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010576-'12-13,'12-12,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.6=100)
A:
PF0006920=Pkinase=FE(5.7=100)
C2:
PF0006920=Pkinase=PD(1.5=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCTTACGAGTCCTGGGGG
R:
CGAGGTGAAGAAAGGGTGCTC
Band lengths:
140-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development