GgaEX0006488 @ galGal4
Exon Skipping
Gene
ENSGALG00000004735 | MAP2K3
Description
dual specificity mitogen-activated protein kinase kinase 3 [Source:RefSeq peptide;Acc:NP_001012805]
Coordinates
chr14:4489593-4491381:-
Coord C1 exon
chr14:4491242-4491381
Coord A exon
chr14:4490555-4490600
Coord C2 exon
chr14:4489593-4489904
Length
46 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTTCCCTTCAGTTT
3' ss Score
11.59
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
ATCGAGTTGGCCATCCTCCGCTTCCCCTATGAGTCCTGGGGCACCCCGTTCCAGCAGCTCAAGCAGGTGGTGGAGGAGCCCTCACCCCAGCTGCCCCCCGAGCGCTTCTCCAAGGAGTTCGTGGACTTCACGGCGCAGTG
Seq A exon
TTTAAGGAAGAACCCCGCTGAGCGAATGAACTATTTAGAACTTATG
Seq C2 exon
GAGCACCCCTTCTTCACCCTACACGACACCAAAGAGACTGACATGGCCTCCTTCGTGACAGAGATCCTCGGGGATGACTCTTAACTGGAGCCCCACTGCTCCGTGCAGTGCCCTGAGGAGCAGATGCGGACTTCAATTCGTGGTGGTTTGCACAAATTGTGTTCCTCAGCCCCCGGACAGCTCTGGGCACAGCCCCATCGCAGCCTCTTTTCTCTTTGCCTGAAATCTTCGAGGAAGAGCCTTGGAAGCCAACACCTTCACCCCTTCAGATGCTGGGGGCACGAGGAGGGGATGGTGCCCGACCTTGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004735_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(19.5=100)
A:
PF0006920=Pkinase=FE(6.4=100)
C2:
PF0006920=Pkinase=PD(1.7=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCCTATGAGTCCTGGGG
R:
TCGTGTAGGGTGAAGAAGGGG
Band lengths:
146-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]