DreEX6070547 @ danRer10
Exon Skipping
Gene
ENSDARG00000099184 | map2k6
Description
mitogen-activated protein kinase kinase 6 [Source:ZFIN;Acc:ZDB-GENE-010202-3]
Coordinates
chr12:36457903-36464305:+
Coord C1 exon
chr12:36457903-36458042
Coord A exon
chr12:36460894-36460939
Coord C2 exon
chr12:36463763-36464305
Length
46 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTGGTTTTGTTTCAGCTT
3' ss Score
9.11
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATCGAGCTGGCGATTCTGCGGTTTCCCTATGACTCATGGGGGACGCCATTTCAGCAGCTAAAGCAGGTGGTGGAGGAGCCATCGCCTCAGCTGCCCGCCGACCGATTCTCTGCCGACTTCGTGGACTTCACATCACAGTG
Seq A exon
CTTAAGGAAGAATTCCACAGAGCGACCGACTTATACAGAATTAATG
Seq C2 exon
CAACATCCCTTCTTCACTCTCCACGACTCCAAAGACACAGACGTGGCAAGTTTTGTGAAGACCATCCTCGGGGACTGAGAGTGTTCCTGTGGGCCAAACTGACACACCACCGCCACCACCGCCGGGGGGAGAAACGGGACTGTTCCAGAAAATACAAAACAACAAAAAACGAAAACATCAATCGCAAGACTTAACACCTGTCAAACATGACAACTGTGCGCAGGACGGAAGAACCACGGGCCGTGTGCATGTATGAGTGAGCATCGCCTGTGTGTGCAGACTTTAAAAGGTTTTACAGTCCCAAGTCAAAAAAACAACAACAACTTCAGTCGTTCAATCTCAGCTTTACCTCTAAATTAAAAACACAATCAGTTTTAGCATCCGGTGATGAGTCTGTTCTAGTTGTCTGTTGAGATTTTCTCCCAGTCGCACATGAAATGTATTTTTCCCCAAAAAAAGTCATCAGAAATGTTCCTCGCCCCCATCGACGCCCGGTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099184-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.6=100)
A:
PF0006920=Pkinase=FE(5.7=100)
C2:
PF0006920=Pkinase=PD(1.5=15.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTAAAGCAGGTGGTGGAG
R:
TTGCCACGTCTGTGTCTTTGG
Band lengths:
135-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]