RnoEX0052218 @ rn6
Exon Skipping
Gene
ENSRNOG00000004437 | Map2k6
Description
mitogen-activated protein kinase kinase 6 [Source:RGD Symbol;Acc:620666]
Coordinates
chr10:98804585-98823287:+
Coord C1 exon
chr10:98804585-98804724
Coord A exon
chr10:98816444-98816489
Coord C2 exon
chr10:98822399-98823287
Length
46 bp
Sequences
Splice sites
3' ss Seq
GTGATTTTTTTTTCTTTAAGCTT
3' ss Score
8.3
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATTGAGCTGGCCATCCTCCGGTTTCCCTATGATTCTTGGGGAACGCCCTTCCAGCAGCTAAAACAGGTGGTAGAAGAGCCGTCTCCACAACTCCCAGCGGACAAGTTCTCTGCTGACTTCGTTGACTTTACCTCACAGTG
Seq A exon
CTTGAAGAAAAATTCCAAAGAACGGCCCACGTATCCAGAGCTTATG
Seq C2 exon
CAACATCCATTTTTCACCGTCCATGAAGCCAAAGCAGCAGATGTGGCGTCTTTCGTAAAACTGATACTCGGGGACTAAAAAGCCACGGACTTGACTGGTTGACCCTACTGTGGATTGGTGGGTTTACAGGGCGAAGTGAGTTCACCACAGCGCCAACAGAAAGTCATCTTGAGATCATTGAACCCTGCCTCTCTGAGGGGCTTCCTCTCCCTGTTTTTCTTTTTCCTCTCCGAAGGGGGCCTTGGAATCTCTAGCGTAGGCTGAGCTCTCTATATGGATGAAATATGATAGAGGCTTAGGACTCGAAAAGGTGATAAAATATTTAATGGCGAGGCATACGAGGAGTCCTCAAGCCTCTGGGATCTCTCGTGTTCTTTACAAAATGAATGCATTGGCCCTGGTAACAAGGTGCTACAGTAGTTGACGAGATTGTAAAGTAGGTTCGTAGCGTATCCCACTTATTTTAATATTTATGTTTCAGTGCTTGGTTGGAAATATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004437_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(18.7=95.7)
A:
PF0006920=Pkinase=FE(5.7=100)
C2:
PF0006920=Pkinase=PD(1.5=15.4)
Main Skipping Isoform:
ENSRNOT00000006217fB8317
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGTAGAAGAGCCGTCTC
R:
TACGAAAGACGCCACATCTGC
Band lengths:
133-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]