GgaEX1034817 @ galGal4
Exon Skipping
Gene
ENSGALG00000004370 | MAP2K6
Description
mitogen-activated protein kinase kinase 6 [Source:HGNC Symbol;Acc:HGNC:6846]
Coordinates
chr18:8285124-8295962:+
Coord C1 exon
chr18:8285124-8285179
Coord A exon
chr18:8292226-8292271
Coord C2 exon
chr18:8295848-8295962
Length
46 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCTTTTCATTAAAGCTT
3' ss Score
7.76
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGAGACGTGTGGATTTGCATGGAGCTGATGGATACCTCACTGGACAAATTCTACAA
Seq A exon
CTTGAAGAAGAATTCCAAAGAACGGCCAACATACCCAGAGCTTATG
Seq C2 exon
CAACATCCTTTCTTCACCCTGCACGAATCCAAAGAGACAGACGTCGCCTCTTTTGTCAAACTCATCCTGGGAGACTGAGAACTGGACTTTATATGAATTGCCCTTCTGTGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004370_MULTIEX1-5/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.5=100)
A:
PF0006920=Pkinase=FE(5.7=100)
C2:
PF0006920=Pkinase=PD(1.5=15.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGGATTTGCATGGAGCT
R:
CCAGTTCTCAGTCTCCCAGGA
Band lengths:
136-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]