BtaEX6091079 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001609 | MAP2K6
Description
Bos taurus mitogen-activated protein kinase kinase 6 (MAP2K6), mRNA. [Source:RefSeq mRNA;Acc:NM_001034045]
Coordinates
chr19:61708769-61721727:-
Coord C1 exon
chr19:61721588-61721727
Coord A exon
chr19:61715142-61715187
Coord C2 exon
chr19:61708769-61709103
Length
46 bp
Sequences
Splice sites
3' ss Seq
GATTTTTTTTTTCCTTTAAGCTT
3' ss Score
8.69
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATCGAGCTGGCCATCCTCCGGTTTCCCTACGACTCGTGGGGGACTCCTTTCCAGCAGCTCAAACAGGTGGTGGAGGAGCCGTCGCCGCAGCTGCCCGCAGACAAGTTCTCCGAAGAGTTTGTTGACTTTACCTCACAGTG
Seq A exon
CTTGAAGAAGAATTCCAAAGAAAGGCCAACATATCCAGAGCTTATG
Seq C2 exon
CAACATCCGTTTTTCACCCTACACGAATCCAAAGCGACAGACGTGGCATCTTTTGTAAAATCAATTCTTGGAGACTAAAAACAATGGACTCCATCGGTTGACCCTCCTGTGGATTGGTGGGTTTACAGGCTGATGTCCACTGAAGCGCCAATAGAAACTCATCTTTGAGATAATTTAACCCTGCCTCTCAGAAGGTTTTTTTCTTCCCCATTTTCTCTTTTTTCCCCTCCAAAGGGGGCCTTGGAATCTATAGTTATAGAATGAACTGTCTAGATGGATGAAATATGATAAAGGCTTAGGACTTAAAAAGGTGATTAAATATTTAATGATGTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001609-'28-14,'28-13,35-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.6=100)
A:
PF0006920=Pkinase=FE(5.7=100)
C2:
PF0006920=Pkinase=PD(1.5=15.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCAAACAGGTGGTGGAG
R:
CCACGTCTGTCGCTTTGGATT
Band lengths:
132-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]