GgaEX6016394 @ galGal3
Exon Skipping
Gene
ENSGALG00000004370 | F1NVF2_CHICK
Description
NA
Coordinates
chr18:8026428-8033393:+
Coord C1 exon
chr18:8026428-8026567
Coord A exon
chr18:8029217-8029262
Coord C2 exon
chr18:8032839-8033393
Length
46 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCTTTTCATTAAAGCTT
3' ss Score
7.76
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATCGAGCTGGCCATCCTGCGCTTTCCCTACGACTCCTGGGGGACGCCCTTCCAGCAGCTCAAGCAGGTGGTGGAGGAGCCGTCGCCGCAGCTCCCGGCAGACAAGTTCTCAGCAGAGTTCGTCGATTTTACCTCGCAATG
Seq A exon
CTTGAAGAAGAATTCCAAAGAACGGCCAACATACCCAGAGCTTATG
Seq C2 exon
CAACATCCTTTCTTCACCCTGCACGAATCCAAAGAGACAGACGTCGCCTCTTTTGTCAAACTCATCCTGGGAGACTGAGAACTGGACTTTATATGAATTGCCCTTCTGTGGACTGGTGGGTGCAGGGGAGGGGCGCGTGGCAGGACTTGTCATGGAAGCACCAACAGAAAGTCGCCGTGTTTTGTTTTGTTTTGTTTTTATTCTGAGAAACCCCCGCCTCGCCGAAGTTTTTAAAAGGGTTCTTTGGTATCCATAGTGACATAGAACGAGCTGGTTAGTGAAATGAATTCTAATAAGGTTGGTAACCTTGAAACAGAAGCAAAACAACAACAACAACAACAACAAAATCTAAGAGTGATTTACATATTTAATGACAGTCAGAATCCCTCTTCCTAACTTTCTCCTCGTTCCCTTTCCCTTCCTCCTGAACAGGAATTTGCTTTGTCATGGTAATAGGTGCTATGGTAGTCATGAAGTTGTATGTAGATTTATATTTTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004370-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.5=100)
A:
PF0006920=Pkinase=FE(5.7=100)
C2:
PF0006920=Pkinase=PD(1.5=15.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCCTACGACTCCTGGGG
R:
TTCGTGCAGGGTGAAGAAAGG
Band lengths:
147-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]