MmuEX6090931 @ mm9
Exon Skipping
Gene
ENSMUSG00000020623 | Map2k6
Description
mitogen-activated protein kinase kinase 6 [Source:MGI Symbol;Acc:MGI:1346870]
Coordinates
chr11:110360697-110374955:+
Coord C1 exon
chr11:110360697-110360836
Coord A exon
chr11:110368020-110368065
Coord C2 exon
chr11:110374103-110374955
Length
46 bp
Sequences
Splice sites
3' ss Seq
CTTATTTTTTTCTTTTTAAGCTT
3' ss Score
10.06
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATCGAGCTGGCCATCCTTCGGTTTCCTTATGATTCTTGGGGAACGCCCTTCCAGCAGCTAAAGCAGGTGGTCGAAGAGCCCTCTCCTCAGCTCCCAGCAGACAAGTTCTCCGCGGACTTTGTTGACTTTACCTCACAGTG
Seq A exon
CTTGAAGAAAAATTCCAAAGAACGGCCCACATATCCAGAGCTTATG
Seq C2 exon
CAACATCCATTTTTCACCGTACATGAATCCAAAGCAGCAGACGTGGCATCTTTTGTAAAACTGATACTTGGGGACTAAAAAGCCATGGACTTAACTGGTCGACCCTACTGTGGATTGGTGGGTTTACAGGGTGAAGAAAGTTCACTACAGAGCCAACAGAAAGTCATCTTGAGGTCATTGAACCCTGCCTTTCTGAGGGGTTTCCTCTCCCCGTTTTTCTTTTTCCTCTCCAAAGGGGGCCTTGGAATCTCTAGCGTAGGCTGAACTCTCTAGATGGATGAAATACAACAAAGGCTTAGGACTTGAAATGGTGATTAAATATTTAATGGCAAGTCATACGGGTGGGTCCTCGAGCTTCTCAGATCTCTCGTGTTCTTTACGAAATGAATGCAATTGGCCCTGGTAACAAGGTGCTACAGTAGTGAAGAGATTGTGAAGTAGATTTGTAGCGTATCCCACTTATTATTTTAATATTTATGTTTCAGTGCTTGGTTGGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020623-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(16.9=85.1)
A:
PF0006920=Pkinase=FE(5.7=100)
C2:
PF0006920=Pkinase=PD(1.5=15.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGCGGACTTTGTTGACTT
R:
ATCCACAGTAGGGTCGACCAG
Band lengths:
148-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: