MmuEX6085968 @ mm10
Exon Skipping
Gene
ENSMUSG00000018932 | Map2k3
Description
mitogen-activated protein kinase kinase 3 [Source:MGI Symbol;Acc:MGI:1346868]
Coordinates
chr11:60949921-60952811:+
Coord C1 exon
chr11:60949921-60950060
Coord A exon
chr11:60951158-60951203
Coord C2 exon
chr11:60951764-60952811
Length
46 bp
Sequences
Splice sites
3' ss Seq
TTCACTGCCCTCTTTCCTAGCCT
3' ss Score
8.07
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATCGAGATGGCCATTCTGCGATTCCCTTATGAGTCTTGGGGCACACCGTTCCAGCAGCTGAAGCAGGTGGTGGAGGAGCCATCCCCACAGCTCCCAGCGGACCAGTTCTCCCCTGAGTTTGTGGACTTCACTAGCCAGTG
Seq A exon
CCTAAGGAAGAACCCTGCAGAGCGCATGAGCTACCTGGAGCTGATG
Seq C2 exon
GAACACCCATTCTTCACCTTGCACAAAACTAAGAAGACAGACATTGCTGCCTTTGTGAAGGAGATCCTGGGAGAGGATTCATAGGGACTGGCCCAGGACCCCACTGGTCTGCCAGCATCCATACATCCGTGCTGGGGCAGCACTTACCTACAGCCATAAGCTACTGCCATTCTGTTCCTGGGCATTTGAGAAATTAAGGGGTTGTTCCTGTCGGTCTCTGCAACTAGCTGTCCCAAGTGCCAAAGAACCAGACCTCAGGGGCTCCCAGCCAGGCCATATGTGCCCCACAGTGCCTCTGCTGTTGCTGCTCCCAGGGTCTCAGGCCTCTACCCAAGGGATGAATCTGACAGGGCCTGTGTACCCCGGCAAACGCTGTCGCTTCTGAAGAGCAGGCAGCTGGTGTCTCTCTGGACAGGCCATAGCCTTGGTACTGTCCTGGATGCCATGCAGGTTGTATATATATTTTAAATCACAACTGAATGAATGGACTTCGTACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018932_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.6=100)
A:
PF0006920=Pkinase=FE(5.7=100)
C2:
PF0006920=Pkinase=PD(1.5=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCAGTTCTCCCCTGAGTT
R:
GGCCAGTCCCTATGAATCCTCT
Band lengths:
135-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types