BtaEX0021850 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047217 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr7:45039730-45043368:-
Coord C1 exon
chr7:45043157-45043368
Coord A exon
chr7:45042319-45042525
Coord C2 exon
chr7:45039730-45039946
Length
207 bp
Sequences
Splice sites
3' ss Seq
GCCCCGCCCTCTCCCCACAGCTG
3' ss Score
13.19
5' ss Seq
CAGGTGCCG
5' ss Score
6.46
Exon sequences
Seq C1 exon
GGCTGGCCCTGGCCTTCCACGACGGCAGTGTCCACATCGTGCACCGGCTCTCACTGCAGACCATGGCCATCTTCTACAGCTCTGCCGCCCCGCGCCCCATAGACGAGCCAGCTCTCAAGCGCCCCCGGACCACAGGCCCCGCCGTCCACTTCAAGGCCATGCAACTCTCCTGGACCTCCCTGGCCCTCGTGGGCATTGACAACCACGGCAGG
Seq A exon
CTGAGCATGTTGCGCATCTCGCCATCCATGGGCCATTCGCTGGACGTGGGGTTGGCCCTGCGGCACCTGCTTTTCCTGCTGGAGTACTGCATGGTGACTGGCTATGACTGGTGGGACATCCTGCTGCACGTGCAGCCCGGCATGGTGCAGAGCCTGGTGGAGAAGCTGCATGAGGAGTACACACGCCAGAAGGCCGAGCTGCAGCAG
Seq C2 exon
GTCGTGACGAGGGTCCCACAAGTGAGCCAGACGAGGCGCTGGTGGATGAGTGCTGCCTACTGCCCAGCCAGCTGCTCATCCCCAGCCTGGACTGGCTGCCTGTTAGTGACGGACTGGTCAGCCGCCTGCAGCCCAAGCAGCCCCTGCGCCTGCACTTTGGCAAGGCCCCTGCTCTTCCTGGTAGCTCCACTGGTCTGCAGCTGGATGGCCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047217_MULTIEX1-1/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(9.8=100)
A:
PF116353=Med16=FE(9.5=100)
C2:
PF116353=Med16=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATAGACGAGCCAGCTCTCA
R:
TGGAGCTACCAGGAAGAGCAG
Band lengths:
305-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development