DreEX6091158 @ danRer10
Exon Skipping
Gene
ENSDARG00000040779 | med16
Description
mediator complex subunit 16 [Source:ZFIN;Acc:ZDB-GENE-090306-4]
Coordinates
chr11:14061976-14073185:+
Coord C1 exon
chr11:14061976-14062193
Coord A exon
chr11:14069856-14070062
Coord C2 exon
chr11:14072975-14073185
Length
207 bp
Sequences
Splice sites
3' ss Seq
TTCATCTTCTTTGATTTCAGTTG
3' ss Score
8.36
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GTCTTGCCTTGGCATTCCATGATGGCAGTATCCAGATTCTCCATCGCCTTTCCCTCCAAACAGTGGGAATGTTCTATGGTTCCTCTGGTTCCTCCCAGCGCGTTGGAGAAGAACCTGCCATTAAACGCCAGAGAGCCGGAGGCCCAATGCTGCACTTCAAAGCCCTTCAGTTCTCTTGGACATCTTTAGCTCTGGTGGGCATAGACAATCATGGCAAG
Seq A exon
TTGCACATGTTTCGAGTGTCCCCATCCATGGGCCAAATGTTGGACATGAACACCCTCCTGCGCCATTTACTGTTTCTCCTGGAGTACTGCATGGTAACAGGATATGACTGGTGGGACGTGCTGCTTCATGCACAGCCTGGCATGGTTCATAACCTTCTGGAGAAGCTTCATGAGGAATACATGAGACAAAACCAAGCACTGCAGCAG
Seq C2 exon
GTTTTGTCCACCCGTATAGTAGCAGTGAAGGCATCTCTGTGTAAGCTGTCATCTGCCACTGCAGCAAGAGCATGTGACTTCCATGCAAAACTGCTCCTCATTGCCATCAGCTCCACGCTGAAGTCGTTACTGAGACCTCATGTGCTTAACACCCCGGATAAAAGTCCTGGAGACAGACTGTCTGAGATCTGTGCCAAAAACACTGACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040779-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(10.0=100)
A:
PF116353=Med16=FE(9.5=100)
C2:
PF116353=Med16=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGCCTTTCCCTCCAAACA
R:
GTGGAGCTGATGGCAATGAGG
Band lengths:
293-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]