MmuEX6049649 @ mm9
Exon Skipping
Gene
ENSMUSG00000013833 | Med16
Description
mediator complex subunit 16 [Source:MGI Symbol;Acc:MGI:2158394]
Coordinates
chr10:79360981-79362154:-
Coord C1 exon
chr10:79361946-79362154
Coord A exon
chr10:79361642-79361848
Coord C2 exon
chr10:79360981-79361191
Length
207 bp
Sequences
Splice sites
3' ss Seq
TCAGCATAGCCTCCCCGCAGCTC
3' ss Score
3.17
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCTTAGCGCTGGCCTTCCAGGATGGCAGCGTGCACATGGTGCACCGACTGTCCCTGCAGACCATGGCGGTGTTCTACAGCTCAGCCCCGCGCTCGCTGGATGAGCCGGCCCTAAAGCGCCCACGCACCACATGCCCTGCCGTACACTTTAAAGCCATGCAGCTGTCCTGGACTTCGCTGGCCCTCGTGGGCATCGATAACCATGGGAAG
Seq A exon
CTCAGCATGCTGCGAATCTCTCCATCCCTGGGCCACCCACTGGAGCCCAAGCTGGCCCTGCAGCACCTGCTTTTCCTGCTGGAATACTGCATGGTGACCGGCTATGACTGGTGGGACATCCTGCTACACGTGCAGCCCGGCATGGTGCAGAGCCTGGTGGAGCGGCTGCATGAGGAGTACACTCGCCAGAAGCCCGCCCTGCAACAG
Seq C2 exon
GTCCTCTCCACTCGGATCCTGGCCATGAAGGCTTCACTGTGCAAGCTGTCACCCTGCACAGTGGCTCGTGTGTGTGACTACCACACCAAGCTGTTCCTCATGGCCATCACGTCCACCCTAAAGTCGCTGCTGCGCCCACACTTCCTCAACACCCCTGACAAGAGCCCTGGGGACCGCCTGGCCGAGATCTGCGCCAAGATCACCGATGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013833-'14-13,'14-11,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(9.6=100)
A:
PF116353=Med16=FE(9.5=100)
C2:
PF116353=Med16=FE(9.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGTTCTACAGCTCAGCC
R:
TCAGGGGTGTTGAGGAAGTGT
Band lengths:
301-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: