GgaEX6027967 @ galGal4
Exon Skipping
Gene
ENSGALG00000001978 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr28:4721049-4722340:-
Coord C1 exon
chr28:4722129-4722340
Coord A exon
chr28:4721658-4721864
Coord C2 exon
chr28:4721049-4721259
Length
207 bp
Sequences
Splice sites
3' ss Seq
CCTTTGCCTCCTCCATTCAGCTG
3' ss Score
9.57
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GTCTGGCATTGGCTTTTCATGATGGCAGTGTCCACATTGTTCATCGCCTGTCCCTGCAAATGATGGCTGTCTTCCATGGCTCTTCTTCCCAGCGCCCAGTGGATGAGCAGACTATCAAAAGGCAGCGAACTACTGGTCCCCTGGTTCACTTCAAAGCCATGCAGCTCTCCTGGACGTCTCTGGCCTTGGCTGGCATTGATAGTCATGGGAAG
Seq A exon
CTGAGCATGCTTCGTATCTCCCCCTCCATGGGCCATGTGCTGGACATGAACACCTCCCTCCGCCACTTGCTGTTCCTGTTGGAGTACTGCATGGTGACTGGCTACGACTGGTGGGACATCCTGCTCCACGTCCAGCCCAACATGGTCCAAAACCTGGTGGAGAAGCTGCATGAAGAGTACACACGGCAGAGCGCAGCCCTGCAGCAG
Seq C2 exon
GTCCTGGCCACACGCATTGTTGCCATGAAGGCATCTCTTTGCAAGCTCTCCTCCAGCACGATAGCCCGTGTTTGTGACTACCATGCCAAGCTGTTCCTCATTGCCATCAGCTGCACCCTGAAGTCACTGCTGCGCCCTCACTTCCTCAACACCCCGGATAAGAGTCCTGGGGATCGACTCACAGAGGTCTGCTCCAAGATCACAGATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001978-'13-14,'13-12,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(9.8=100)
A:
PF116353=Med16=FE(9.5=100)
C2:
PF116353=Med16=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGTTCATCGCCTGTCCC
R:
GACTTCAGGGTGCAGCTGATG
Band lengths:
304-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]