BtaEX0022215 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003600 | MGC151839
Description
Bos taurus calpain 8 (CAPN8), mRNA. [Source:RefSeq mRNA;Acc:NM_001081619]
Coordinates
chr16:27692173-27693990:-
Coord C1 exon
chr16:27693779-27693990
Coord A exon
chr16:27692542-27692578
Coord C2 exon
chr16:27692173-27692241
Length
37 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTTCTGTGTTTCAGGGA
3' ss Score
12.35
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
CTGGAGAGTCACACGGACGCGCACCTGGGCCGGGACTTCTTCCTGGGCCGCCCGCCTGCCGCCCGCTCCAGCACCTACGTCAACCTGCGCGAAGTCTCCGCGCGCGTGCAGCTGCCCCCCGGGGAGTATGTGGTGGTGCCGGCCACCTTCGAGCCCTTCCAGGACGGCGACTTCTGCCTGAGGGTGTTCTCCGAGAAGAAGGCCAAGGCCCT
Seq A exon
GGAAATTGGGGATGTGGTAGTTGGAAACCCACATGAG
Seq C2 exon
CCTCGACCCAGCGAGGTGGAGCAAGAAGATGGCCAGCTGAGGAGCCTGTTTGAGAAGTTTGCTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003600-'17-21,'17-20,18-21
Average complexity
S
Mappability confidence:
100%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.269 C2=0.391
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(44.3=100)
A:
PF0106717=Calpain_III=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGGACGGCGACTTCT
R:
TCTCAAACAGGCTCCTCAGCT
Band lengths:
112-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development