GgaEX6029115 @ galGal3
Exon Skipping
Gene
ENSGALG00000009382 | CAPN8
Description
NA
Coordinates
chr3:18843554-18844897:+
Coord C1 exon
chr3:18843554-18843765
Coord A exon
chr3:18844334-18844370
Coord C2 exon
chr3:18844832-18844897
Length
37 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTGTTTTTCTTAGGAT
3' ss Score
11.18
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
CTGGAAAATAACAAAGACATTCATCTGAACCGTGCTTTCTTCACAAGGAACCAACCAGTAGCCCGGTCTGAGACTTACATCAACCTGCGTGAAGTCTCCAGCCGCATTAAATTGCCCAAAGGAGAGTACCTCATTGTGCCATCCACATTTGAGCCTTACAAAAATGGAGAGTTCTGCCTTCGAGTTTTTTCTGAGAAAAAGGTTAAAACTCA
Seq A exon
GATGATTGGTGATACGGTGGCTGCAAAACCATATGAG
Seq C2 exon
CCTCATGTTGATAACAAAGATATAGATGAAGAGTTCAAGACTCTATTTCAAAAACTCTCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(44.3=100)
A:
PF0106717=Calpain_III=PD(0.1=0.0)
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGTTCTGCCTTCGAGT
R:
TCTCCAGAGAGTTTTTGAAATAGAGT
Band lengths:
113-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]