HsaEX7000839 @ hg38
Exon Skipping
Gene
ENSG00000203697 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:HGNC:1485]
Coordinates
chr1:223553832-223609364:-
Coord C1 exon
chr1:223609153-223609364
Coord A exon
chr1:223558131-223558167
Coord C2 exon
chr1:223553832-223553900
Length
37 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCTTTGCATTTCAGAGA
3' ss Score
9.89
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
CTGGAGAGTCACACGGACGCACACTTGGGCCGGGATTTCTTCCTGGCCTACCAGCCCTCAGCCCGCACCAGCACCTACGTCAACCTGCGGGAGGTCTCTGGCCGGGCCCGGCTGCCCCCTGGGGAGTACCTGGTGGTGCCATCCACATTTGAACCCTTCAAAGACGGCGAGTTCTGCTTGAGAGTGTTCTCAGAGAAGAAGGCCCAGGCCCT
Seq A exon
AGAAATTGGGGATGTGGTAGCTGGAAACCCATATGAG
Seq C2 exon
CCACATCCCAGTGAGGTGGATCAGGAAGATGACCAGTTCAGGAGGCTGTTTGAGAAGTTGGCAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203697-'34-25,'34-24,36-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.154 C2=0.348
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(44.3=100)
A:
PF0106717=Calpain_III=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCCTTCAAAGACGGCGAG
R:
AACAGCCTCCTGAACTGGTCA
Band lengths:
112-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains