GgaEX6029115 @ galGal4
Exon Skipping
Gene
ENSGALG00000009382 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:HGNC:1485]
Coordinates
chr3:17066119-17067462:+
Coord C1 exon
chr3:17066119-17066330
Coord A exon
chr3:17066899-17066935
Coord C2 exon
chr3:17067397-17067462
Length
37 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTGTTTTTCTTAGGAT
3' ss Score
11.18
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
CTGGAAAATAACAAAGACATTCATCTGAACCGTGCTTTCTTCACAAGGAACCAACCAGTAGCCCGGTCTGAGACTTACATCAACCTGCGTGAAGTCTCCAGCCGCATTAAATTGCCCAAAGGAGAGTACCTCATTGTGCCATCCACATTTGAGCCTTACAAAAATGGAGAGTTCTGCCTTCGAGTTTTTTCTGAGAAAAAGGTTAAAACTCA
Seq A exon
GATGATTGGTGATACGGTGGCTGCAAAACCATATGAG
Seq C2 exon
CCTCATGTTGATAACAAAGATATAGATGAAGAGTTCAAGACTCTATTTCAAAAACTCTCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=75=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGTTCTGCCTTCGAGT
R:
TCTCCAGAGAGTTTTTGAAATAGAGT
Band lengths:
113-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]