MmuEX0009085 @ mm10
Exon Skipping
Gene
ENSMUSG00000038599 | Capn8
Description
calpain 8 [Source:MGI Symbol;Acc:MGI:2181366]
Coordinates
chr1:182613326-182620218:+
Coord C1 exon
chr1:182613326-182613537
Coord A exon
chr1:182614789-182614825
Coord C2 exon
chr1:182620150-182620218
Length
37 bp
Sequences
Splice sites
3' ss Seq
CATTTCTGTCTGGATTTCAGAGA
3' ss Score
7.15
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
CTGGAGAATCACACCGATGAGCACCTGGGCCGGGATTTCTTCCAGGGCCGCCAGCCCTCCACCTGCTCCAGCACCTACATGAACCTTCGAGAGGTGTCCAGCAGGGTCCAACTCCCCCCAGGACAGTACCTGGTGGTGCCATCCACCTTTGAGCCCTTCAAGGACGGTGACTTCTGCCTGAGGGTGTTCTCGGAGAAGAAGGCCCAGGCTCT
Seq A exon
AGAAATTGGGGACGCTGTTGCTGGAGACCCACATGAG
Seq C2 exon
CCACATCCCCGTGACATGGATGGAGAAGATGAGCACTTCTGGAGCCTGTCTGAGGAGTTTGCGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038599_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=0.769 C2=0.435
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(44.3=100)
A:
PF0106717=Calpain_III=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCACCTTTGAGCCCTTC
R:
AGGCTCCAGAAGTGCTCATCT
Band lengths:
121-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types