RnoEX6045710 @ rn6
Exon Skipping
Gene
ENSRNOG00000003468 | Capn8
Description
calpain 8 [Source:RGD Symbol;Acc:620085]
Coordinates
chr13:101028404-101033769:+
Coord C1 exon
chr13:101028404-101028615
Coord A exon
chr13:101029903-101029939
Coord C2 exon
chr13:101033701-101033769
Length
37 bp
Sequences
Splice sites
3' ss Seq
CATTTCTGTCTGGATTTCAGGGA
3' ss Score
8.16
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
TTGGAGAGTCACACGGATGCACACCTTGGCCGGGACTTCTTCCTGGGACGCCAGCCCTCTACCTGCTCCAGCACTTACATGAACCTTCGGGAGGTGTCCAGCAGGGTCCGACTCCCCCCGGGACAGTACCTGGTGGTGCCATCCACCTTCGAGCCCTTCAAGGATGGTGACTTCTGCTTGAGGGTGTTCTCAGAGAAGAAGGCCAAGGCTCT
Seq A exon
GGAAATTGGGGATACTGTATCTGGACACCCTCATGAG
Seq C2 exon
CCACATCCCCGTGACATGGATGAAGAAGATGAACATGTCCGGAGCCTGTTTGAGGAGTTTGTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003468-'19-17,'19-16,20-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.769 C2=0.435
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(44.3=100)
A:
PF0106717=Calpain_III=PD(0.1=0.0)
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTTCAAGGATGGTGACT
R:
AAACAGGCTCCGGACATGTTC
Band lengths:
112-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]