BtaEX0022746 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003922 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr12:36626586-36653042:-
Coord C1 exon
chr12:36652827-36653042
Coord A exon
chr12:36641468-36641623
Coord C2 exon
chr12:36626586-36627407
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTTTTTAATTTATGTTACAGGGT
3' ss Score
8.6
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GCGAAGGCGGAGGCGGAAGGAGCGAGCGTGGCTACAGTTCCTGGTTCGGGTGCCGACGGCAGTGGTCAGTTGCCTGCAGTCGAAGGAGAGGGATTTGGGGCGAGGGGTAAAGAGAAGGACGCGGCCGCGAAAGGAAAAGAGGCAGGCGGGGACAGCGAGGAGGACGGCGAGAATGTGTTCGAAGTGGAGAAGATCCTGGACATGAAGACTGAAGGG
Seq A exon
GGTAAGGTCCTTTATAAGGTTCGATGGAAAGGATACACAGCAGATGATGATACCTGGGAGCCTGAGATTCACCTTGAGGACTGTAAGGAAGTTCTTCTTGAATTTAGGAAGAAAATTGCAGATAACAAAGCTAAATCAGTGAAGAAAGATATCCAG
Seq C2 exon
AGACTGTCCTTAAATAATGACATATTTGAGGCAAACTCTGATAGTGATCAACAGAGTGAGACTAAAGAAGACACTTCTCCAAAGAAAAAAAAGAAAAAAGTAAGGCATAAGGAAGAGAAAAGCCCCGACGACCTGAAAAAGAAGAAAGCAAAGACTGGGAAACTGAAAGACAAGCCCAAACCAGACCTGGAGAGCTCCTCTGAAAGTTTGGGTTTTGATTTAAGGACAAAGAAAAGAATTTTGGAAGCCAAAGAAGAATTAAAGGAATCCAAAAAGCCCAAAAAAGATGATATAAAAGAAACTAAGGAGTTAAAGAAAGTTAAAAAGGGTGAAATAAGAGATTTAAAGACTAAAATAAGAGACGATTCCAAAGAAATTAGAAAAACAAAAAAAGAGAAATGTGTTGAATCTCAGGTGGACTCTGACCTGGGTGTACTTAGTGATTCCCCGCTTCAGGAAGAGGACTGTGAAGATTTACAGGTTGACAACAGAGAGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003922_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=0.173 C2=0.920
Domain overlap (PFAM):
C1:
PF0038519=Chromo=PU(23.5=16.7)
A:
PF0038519=Chromo=PD(72.5=71.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTGGGGCGAGGGGTAAAG
R:
GTCGTCGGGGCTTTTCTCTTC
Band lengths:
257-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development