GgaEX6006370 @ galGal4
Exon Skipping
Gene
ENSGALG00000017145 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:RefSeq peptide;Acc:NP_001164636]
Coordinates
chr1:178481513-178487092:-
Coord C1 exon
chr1:178486841-178487092
Coord A exon
chr1:178483123-178483278
Coord C2 exon
chr1:178481513-178482239
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTTTGGTTCTTGTCTTACAGGGT
3' ss Score
10.55
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CGCTTTTCCCCATTGCCGTTTGAAACTCGGCCCAAAATGGCGGCGGCGGGGAGCGGGGCTGAGGCGGCGGCGGCCAGGCTGGAGGGGGCGGGGGAAGAGGAGGAGACGGCGGCGGCCGGGGACGGGGAAAATGAGGTGGTGGACGGCGGCGGGGCCGGCGGTGCTGCGGGAGCGGCGGCGGCCGGCGGTGAGAGCGAGGAGGAGGAGGACGTGTTCGAAGTGGAGAAGATCCTCGACGTGAAGACCGAGGGG
Seq A exon
GGTGTAATTCTGTACAAAGTCCGGTGGAAGGGCTATACCTCTGATGACGATACCTGGGAACCAGAGGTTCATTTAGAAGACTGCAAAGAAGTGCTGCTTGAATTCAGAAAAAAGCTTGTGGACACCAAGCCGAAGCCTGCAAAAAAGGACCTTCAG
Seq C2 exon
AAACTTTCTCTAAATGATGACCTGTTTGAAGCAGAATCTGACAATGATGGGCAAAGCGAAATAAAAGAGGATGTTTCACCAAAGAAGAAAAAGAAAAAGTCAAAAGAGGGAGAGGATAGAAGTGCGGATGACCTGAAGAAGAAAAAGTCAAAGTCTGCAAAAGTCAAAGAGAAACCCAGGACAGAATGTGAAAGTTCCTCAGGTACTTTGGGTTTGGATTCAAAACCCAAAAAAAGGACTTCGGAAACAAAGGAGGATTCAAAGGATCCAAAGAAGCAAAGGAAAGAAGATAGTAAGGAAGTGAAGAAAAAGAAGGGAGAAGTTAAAGATGTAAAAATAAAAACTAAAGAAGATTCTAAAGAAAGTAAAAAGTCGCGGAAGGAGAAGCAAGGAGATGCTCAGTTTGACACAGAGACGAGTGCTTTGGATGATGCACTTCTTCAGGAGATTGATAATGAAAATCCAGGCTTGTACTCTGAAAATAAAGAGGAGGAACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145-'0-5,'0-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.847 A=0.365 C2=0.903
Domain overlap (PFAM):
C1:
PF0038519=Chromo=PU(23.5=16.7)
A:
PF0038519=Chromo=PD(72.5=71.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAAAATGAGGTGGTGGAC
R:
CCGCACTTCTATCCTCTCCCT
Band lengths:
256-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]