MmuEX0029500 @ mm10
Exon Skipping
Gene
ENSMUSG00000079184 | Mphosph8
Description
M-phase phosphoprotein 8 [Source:MGI Symbol;Acc:MGI:1922589]
Coordinates
chr14:56668248-56674739:+
Coord C1 exon
chr14:56668248-56668564
Coord A exon
chr14:56672405-56672560
Coord C2 exon
chr14:56673891-56674739
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTTTTTAATCTATGCTATAGGGT
3' ss Score
6.77
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
GAGTCACGCCGCTGGAGCGGATTAGGGCGGAGCGGCAGGCGCGCGGTGCTGTCCCGCTGTGGGTCGCCGGCGGTTTTTCGCGTTGGTTTTGCACTGCGTCTGTGATGGCGGCGGCGGCTGAGGAGGGCATGAGTGCGGCCGCTCTAGTTATGTCAGTTCCCGACAGCATTGGCCGTTCTCCCGAGTCCGAAGGAGTTGGAGCAGGGGACGAAGAGAAGGACGCAGCCACCAAAGGAACGGTGGCCGTTGGGGACAGCGAGGAGGATGGGGAGGACGTTTTCGAGGTGGAGAGGATCCTGGACATGAAGTGCGAGGGA
Seq A exon
GGTAAGAATCTTTATAAAGTTCGATGGAAAGGATATACATCTGAAGATGATACCTGGGAGCCTGAGGTTCATCTGGAGGACTGTAAGGAAGTTCTTCTTGAATTCAGGAAGAAACTTGCTGAGAACAAAGCTAAAGCAGTCAGGAAAGATATTCAG
Seq C2 exon
AGACTATCTTTAAACAATGACATATTTGAGGCAGACAGTGATAGCGACCAGCAAAGTGACACAAAAGAAGATATTTCACCAAGGAAGAAAAAGAAAAAAATAAAGTGCAAAGAAGAGACAAGTCCAGAAGATCTGAGGAAAAAAAGGACAAAAATGGGAAAACTAAAAGACAAGTTCAAGACAGAGCTGGAGAGCACCTCTGAAATAATCGGTTTCGATGTAAAGACGAAGAAAAGAATTTGGGAAGTCAAGGAAGAATTAAAGGACTCCAAAAAGCCCAAAAAGGATGAAATAAAGGAAACCAAGGAATTAAAGAAAGCTAATAAAAGGGCTGAAGTAAGAGATTTAAAGATTAAAATAAGAGAAGATGTCAAAGAGAACCGAAAAACAAAAAAAGAGAGATATATAGAATCTCCGCTGGAGTCTGAATCGCCTAATGATTCCCTCATTCTAGAGGATGACAGTGAAGACTTTATTTCTGACAACAGAGAAGAGAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079184-'5-3,'5-1,10-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.665 A=0.072 C2=0.698
Domain overlap (PFAM):
C1:
PF0038519=Chromo=PU(23.5=16.9)
A:
PF0038519=Chromo=PD(72.5=71.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCGCTCTAGTTATGTCAG
R:
GTGTCACTTTGCTGGTCGCTA
Band lengths:
244-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types