Special

GgaEX6006370 @ galGal3

Exon Skipping

Gene
ENSGALG00000017145 | MPHOSPH8
Description
NA
Coordinates
chr1:183541347-183546867:-
Coord C1 exon
chr1:183546675-183546867
Coord A exon
chr1:183542957-183543112
Coord C2 exon
chr1:183541347-183542073
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTTTGGTTCTTGTCTTACAGGGT
3' ss Score
10.55
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TGAGGCGGCGGCGGCCAGGCTGGAGGGGGCGGGGGAAGAGGAGGAGACGGCGGCGGCCGGGGACGGGGAAAATGAGGTGGTGGACGGCGGCGGGGCCGGCGGTGCTGCGGGAGCGGCGGCGGCCGGCGGTGAGAGCGAGGAGGAGGAGGACGTGTTCGAAGTGGAGAAGATCCTCGACGTGAAGACCGAGGGG
Seq A exon
GGTGTAATTCTGTACAAAGTCCGGTGGAAGGGCTATACCTCTGATGACGATACCTGGGAACCAGAGGTTCATTTAGAAGACTGCAAAGAAGTGCTGCTTGAATTCAGAAAAAAGCTTGTGGACACCAAGCCGAAGCCTGCAAAAAAGGACCTTCAG
Seq C2 exon
AAACTTTCTCTAAATGATGACCTGTTTGAAGCAGAATCTGACAATGATGGGCAAAGCGAAATAAAAGAGGATGTTTCACCAAAGAAGAAAAAGAAAAAGTCAAAAGAGGGAGAGGATAGAAGTGCGGATGACCTGAAGAAGAAAAAGTCAAAGTCTGCAAAAGTCAAAGAGAAACCCAGGACAGAATGTGAAAGTTCCTCAGGTACTTTGGGTTTGGATTCAAAACCCAAAAAAAGGACTTCGGAAACAAAGGAGGATTCAAAGGATCCAAAGAAGCAAAGGAAAGAAGATAGTAAGGAAGTGAAGAAAAAGAAGGGAGAAGTTAAAGATGTAAAAATAAAAACTAAAGAAGATTCTAAAGAAAGTAAAAAGTCGCGGAAGGAGAAGCAAGGAGATGCTCAGTTTGACACAGAGACGAGTGCTTTGGATGATGCACTTCTTCAGGAGATTGATAATGAAAATCCAGGCTTGTACTCTGAAAATAAAGAGGAGGAACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145-'0-2,'0-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.875 A=0.365 C2=0.909
Domain overlap (PFAM):

C1:
PF0038519=Chromo=PU(23.5=18.8)
A:
PF0038519=Chromo=PD(72.5=71.2)
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAAAATGAGGTGGTGGAC
R:
CCGCACTTCTATCCTCTCCCT
Band lengths:
256-412
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]