DreEX6036005 @ danRer10
Exon Skipping
Gene
ENSDARG00000005576 | mphosph8
Description
M-phase phosphoprotein 8 [Source:ZFIN;Acc:ZDB-GENE-050309-191]
Coordinates
chr9:21667637-21678107:-
Coord C1 exon
chr9:21677840-21678107
Coord A exon
chr9:21668787-21668936
Coord C2 exon
chr9:21667637-21668662
Length
150 bp
Sequences
Splice sites
3' ss Seq
GCCCTTGAATATTTTTGTAGGGA
3' ss Score
6.02
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTCGGTTATTCCTTCGCGATCTGGCAACCCAGAGTACTATCCCCGACAGCGGGCTGCTGCTGTGTCCGTGTGTATGTGCACTAGTTCGGCTGTCGTGCGGCCTTCATGCTGTTAGCATATCCATATAAACGACTCGTAAGCGTCAATACACTGCTTAAATAAAGCATAAATGGCGTCCGGAGCCGAGAGAGCGGAGCCTGGAGACAGCGAACAGGATGAAGAAGATGTATATGAAGTGGAGAGGATTATTGACGTGCGAGTGGAGGAG
Seq A exon
GGAGAGGTGCTGTACAGGGTGCGATGGAAGAACTACTCCTCGGAAGATGACACCTGGGAACCTGAAGCGCACCTGGACGACTGCAAGGAGGTGCTGCTGGCCTACAAGAAGGCTCTGGCTGAGTTGAAGCCAAAAAAAGAACCTGCTATG
Seq C2 exon
CTTCCGATGAAGAGTGACCTGTTTGATGCCGACTCTGAGAGTGACAGCGATAAAGAGAAACCCAAAGAGTCACCTATGAAGAAAAAGAAGAAGAAGAAAAAGAAGAAAATTGAGGACTCGGATGATGAGATGTCTGTGAGAGAGAAGAAGAAGAAGAAAAAGAAGGAAAAATGGCGAGAGGACAAGCCTCTGCCTGCGCCTGAGTCTGATGAAGAGGAGAGCAGGGATCCTTCACCCGCACCTTCTAAGAAAGAAACCAAGAAGAGGTTCATTGACTCTGATGATGAGGATGTCCCAGTTACTCCTAAGAAACAGAAGAAGCTTGACAAGCCTAAAGATGCAGGAAAGGTGAAGAAAGAGAGCGGAGAGGAACGCAAGAAAAAGAAAATCAAGTCCAAAAGAGAGATTGATTCTTCGGACGAAGATGAGAAGAGTGACGCGCCATCTGAGTCCCACACAGATGATACAACAAACACAGAAACAAATGATTCCTTCAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005576-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.758 A=0.420 C2=1.000
Domain overlap (PFAM):
C1:
PF0038519=Chromo=PU(23.5=36.4)
A:
PF0038519=Chromo=PD(72.5=74.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCGTGTGTATGTGCACT
R:
TGTCACTCTCAGAGTCGGCAT
Band lengths:
253-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]