Special

BtaEX0023059 @ bosTau6

Exon Skipping

Gene
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51083439-51084042:+
Coord C1 exon
chr22:51083439-51083569
Coord A exon
chr22:51083656-51083758
Coord C2 exon
chr22:51083906-51084042
Length
103 bp
Sequences
Splice sites
3' ss Seq
CCCTTGTCCGCCCACTGCAGACT
3' ss Score
8.21
5' ss Seq
GCAGTAAGC
5' ss Score
5.06
Exon sequences
Seq C1 exon
AGACCTTCGGGAGAACTTCTGTCGAAACCCCGACGGATCGGAGGCGCCCTGGTGCTTCACATCGCGGCCTGGCATGCGCATGGCCTTCTGTTACCAGATCCGGCGCTGCACCGACGACGTGCGGCCCGAGG
Seq A exon
ACTGCTACCATGGCGCGGGGGAACTGTACCGCGGCTCTGTTAGCAAGACCCGAAAGGGCATCCGGTGTCAGAACTGGTCGGCTGAGACGCCACATAAGCCGCA
Seq C2 exon
GTTCAAGCACACTTCTGCCCCGCACACGCCCCTGGAGGAAAACTTCTGCCGGAACCCAGACGGGGATAGTCACGGGCCCTGGTGCTACACCACGGACCCAGGGACTCCATTCGACTACTGTGCGCTGCGGCGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.143 C2=0.255
Domain overlap (PFAM):

C1:
PF0005113=Kringle=PD(45.6=80.0)
A:
PF0005113=Kringle=PU(41.8=94.3)
C2:
PF0005113=Kringle=PD(57.0=95.7)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTTCTGTCGAAACCCCG
R:
GCGCACAGTAGTCGAATGGAG
Band lengths:
245-348
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development