DreEX6024401 @ danRer10
Exon Skipping
Gene
ENSDARG00000103308 | mst1
Description
macrophage stimulating 1 [Source:ZFIN;Acc:ZDB-GENE-020806-3]
Coordinates
chr6:53408840-53411307:-
Coord C1 exon
chr6:53411177-53411307
Coord A exon
chr6:53409059-53409161
Coord C2 exon
chr6:53408840-53408976
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTGTGTCCTCCTTATTTTAGATT
3' ss Score
11.36
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GGGTTTAGAGGAGAACTACTGTCGTAACCCGGACGGCTCTGAAGCACCGTGGTGTTTTACGTCTCTGCCGGAGATGCGGACGGCGCTCTGCCTGCAGATCAAACGCTGCGCTGATGACATCGAGGCTGAAG
Seq A exon
ATTGCTATAATGAAATCGGCAAAAACTATCGAGGTGTGGTCCGCAAGACCCGGAAAGGAATCCTCTGCCAGAAATGGAGCATCAACACACCTCACAAAACCAA
Seq C2 exon
GATAAACCCCAAAACACACCCAGAAGCAAACCTTACGGACAACTACTGCAGGAATCCAGACGGAGATCATCACGGCCCCTGGTGCTACACCTCTGACCCCAAGACTGAGTTTGACTACTGCGCCATCAAGCAGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103308-'12-13,'12-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.213
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(45.6=80.0)
A:
PF0005113=Kringle=PU(41.8=94.3)
C2:
PF0005113=Kringle=PD(57.0=95.7)
Main Skipping Isoform:
ENSDART00000162791fB3970
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACTGTCGTAACCCGGACG
R:
GCTTGATGGCGCAGTAGTCAA
Band lengths:
248-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]